Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs58975288 chr2:236192833 A/G 3.43E-7 171 26.58 24.7 3.07 KM Plot
PCPG rs59024564 chr1:36922826 G/A 8.27E-5 176 25.4 26.62 10.3 KM Plot
PCPG rs59108015 chr18:74524737 G/C 7.46E-9 174 25.6 24.83 10.17 KM Plot
PCPG rs59145894 chr16:90116366 G/A 7.72E-9 177 25.87 20.2 6.62 KM Plot
PCPG rs59157557 chr2:61469410 C/T 6.95E-5 177 23.43 30.93 10.3 KM Plot
PCPG rs59268342 chr2:236192637 C/T 3.73E-7 170 27.2 24.7 3.07 KM Plot
PCPG rs59295315 chr12:56708576 G/A 1.01E-7 177 25.35 29.13 0.8 KM Plot
PCPG rs59350672 chr19:19688629 G/C 0.00034 177 25.77 26.05 23.43 KM Plot
PCPG rs59379575 chr22:50235976 C/CA 0.000197 172 25.6 20.17 15.18 KM Plot
PCPG rs594202 chr5:179417335 C/T 0.000243 176 24.1 34.73 14.83 KM Plot
PCPG rs59433502 chr1:36923222 C/G 8.73E-5 175 25.47 26.62 10.3 KM Plot
PCPG rs595306 chr17:36997288 T/C 4.87E-6 173 25.17 36.33 24.53 KM Plot
PCPG rs59549862 chr1:40519303 A/G 0.000336 174 25.2 27.27 25.17 KM Plot
PCPG rs59561210 chr2:242518756 A/G 1.24E-10 170 25.08 25.53 10.3 KM Plot
PCPG rs59607483 chr18:44144598 GT/G 2.12E-5 176 25.28 25.7 11.78 KM Plot